Gene : Medtr1g032590 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR23079:SF9 - RNA-DEPENDENT RNA POLYMERASE 1 Description:  RNA-directed RNA polymerase
Genomic Order:  1549 Name:  ? Medtr1g032590
Secondary Identifier:  ? PAC:31099875
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g032590 0.5kb upstream 0.5kb upstream 4766 true chr1: 11613995-11618760 Medicago truncatula
Medtr1g032590 0.5kb upstream 0.5kb upstream 500 false chr1: 11613995-11614494 Medicago truncatula
Medtr1g032590 0.5kb downstream 0.5kb downstream 4766 true chr1: 11614495-11619260 Medicago truncatula
Medtr1g032590 0.5kb downstream 0.5kb downstream 500 false chr1: 11618761-11619260 Medicago truncatula
Medtr1g032590 1.0kb upstream 1.0kb upstream 5266 true chr1: 11613495-11618760 Medicago truncatula
Medtr1g032590 1.0kb upstream 1.0kb upstream 1000 false chr1: 11613495-11614494 Medicago truncatula
Medtr1g032590 1.0kb downstream 1.0kb downstream 5266 true chr1: 11614495-11619760 Medicago truncatula
Medtr1g032590 1.0kb downstream 1.0kb downstream 1000 false chr1: 11618761-11619760 Medicago truncatula
Medtr1g032590 2.0kb upstream 2.0kb upstream 6266 true chr1: 11612495-11618760 Medicago truncatula
Medtr1g032590 2.0kb upstream 2.0kb upstream 2000 false chr1: 11612495-11614494 Medicago truncatula
Medtr1g032590 2.0kb downstream 2.0kb downstream 6266 true chr1: 11614495-11620760 Medicago truncatula
Medtr1g032590 2.0kb downstream 2.0kb downstream 2000 false chr1: 11618761-11620760 Medicago truncatula
Medtr1g032590 5.0kb upstream 5.0kb upstream 9266 true chr1: 11609495-11618760 Medicago truncatula
Medtr1g032590 5.0kb upstream 5.0kb upstream 5000 false chr1: 11609495-11614494 Medicago truncatula
Medtr1g032590 5.0kb downstream 5.0kb downstream 9266 true chr1: 11614495-11623760 Medicago truncatula
Medtr1g032590 5.0kb downstream 5.0kb downstream 5000 false chr1: 11618761-11623760 Medicago truncatula
Medtr1g032590 10.0kb upstream 10.0kb upstream 14266 true chr1: 11604495-11618760 Medicago truncatula
Medtr1g032590 10.0kb upstream 10.0kb upstream 10000 false chr1: 11604495-11614494 Medicago truncatula
Medtr1g032590 10.0kb downstream 10.0kb downstream 14266 true chr1: 11614495-11628760 Medicago truncatula
Medtr1g032590 10.0kb downstream 10.0kb downstream 10000 false chr1: 11618761-11628760 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304154 5265 Fabidae View MSA
124067400 5270 Rosid View MSA
123752294 5271 Pentapetalae View MSA
122797649 5272 Eudicot View MSA
122047757 5273 Angiosperm View MSA
121351040 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.186        
cufflinks 0.216        
cufflinks 0.356        
cufflinks 0.11        
cufflinks 0.316        
cufflinks 0.014     Low Low
cufflinks 0.161        
cufflinks 0.376        
cufflinks 0.174        

0 Strain