Gene : Medtr2g034040 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR24423:SF563 - PHYTOCHROME E Description:  phytochrome protein B
Genomic Order:  1811 Name:  ? Medtr2g034040
Secondary Identifier:  ? PAC:31066788
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g034040 0.5kb upstream 0.5kb upstream 7453 true chr2: 12986584-12994036 Medicago truncatula
Medtr2g034040 0.5kb upstream 0.5kb upstream 500 false chr2: 12993537-12994036 Medicago truncatula
Medtr2g034040 0.5kb downstream 0.5kb downstream 7453 true chr2: 12986084-12993536 Medicago truncatula
Medtr2g034040 0.5kb downstream 0.5kb downstream 500 false chr2: 12986084-12986583 Medicago truncatula
Medtr2g034040 1.0kb upstream 1.0kb upstream 7953 true chr2: 12986584-12994536 Medicago truncatula
Medtr2g034040 1.0kb upstream 1.0kb upstream 1000 false chr2: 12993537-12994536 Medicago truncatula
Medtr2g034040 1.0kb downstream 1.0kb downstream 7953 true chr2: 12985584-12993536 Medicago truncatula
Medtr2g034040 1.0kb downstream 1.0kb downstream 1000 false chr2: 12985584-12986583 Medicago truncatula
Medtr2g034040 2.0kb upstream 2.0kb upstream 8953 true chr2: 12986584-12995536 Medicago truncatula
Medtr2g034040 2.0kb upstream 2.0kb upstream 2000 false chr2: 12993537-12995536 Medicago truncatula
Medtr2g034040 2.0kb downstream 2.0kb downstream 8953 true chr2: 12984584-12993536 Medicago truncatula
Medtr2g034040 2.0kb downstream 2.0kb downstream 2000 false chr2: 12984584-12986583 Medicago truncatula
Medtr2g034040 5.0kb upstream 5.0kb upstream 11953 true chr2: 12986584-12998536 Medicago truncatula
Medtr2g034040 5.0kb upstream 5.0kb upstream 5000 false chr2: 12993537-12998536 Medicago truncatula
Medtr2g034040 5.0kb downstream 5.0kb downstream 11953 true chr2: 12981584-12993536 Medicago truncatula
Medtr2g034040 5.0kb downstream 5.0kb downstream 5000 false chr2: 12981584-12986583 Medicago truncatula
Medtr2g034040 10.0kb upstream 10.0kb upstream 16953 true chr2: 12986584-13003536 Medicago truncatula
Medtr2g034040 10.0kb upstream 10.0kb upstream 10000 false chr2: 12993537-13003536 Medicago truncatula
Medtr2g034040 10.0kb downstream 10.0kb downstream 16953 true chr2: 12976584-12993536 Medicago truncatula
Medtr2g034040 10.0kb downstream 10.0kb downstream 10000 false chr2: 12976584-12986583 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308488 5265 Fabidae View MSA
124065248 5270 Rosid View MSA
123737518 5271 Pentapetalae View MSA
122797861 5272 Eudicot View MSA
122046644 5273 Angiosperm View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.354       Low
cufflinks 5.39       High
cufflinks 3.627        
cufflinks 1.433        
cufflinks 5.681       High
cufflinks 0.222       Low
cufflinks 1.362        
cufflinks 3.841        
cufflinks 1.342        

0 Strain