Gene : SapurV1A.1953s0020 S. purpurea v1.0
Defline:  (1 of 3) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO // SUBFAMILY NOT NAMED Genomic Order:  2
Name:  ? SapurV1A.1953s0020 Secondary Identifier:  ? PAC:31444129
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
SapurV1A.1953s0020 0.5kb upstream 0.5kb upstream 6534 true Scaffold1953: 30425-36958 Salix purpurea
SapurV1A.1953s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold1953: 30425-30924 Salix purpurea
SapurV1A.1953s0020 0.5kb downstream 0.5kb downstream 6534 true Scaffold1953: 30925-37458 Salix purpurea
SapurV1A.1953s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold1953: 36959-37458 Salix purpurea
SapurV1A.1953s0020 1.0kb upstream 1.0kb upstream 7034 true Scaffold1953: 29925-36958 Salix purpurea
SapurV1A.1953s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold1953: 29925-30924 Salix purpurea
SapurV1A.1953s0020 1.0kb downstream 1.0kb downstream 7034 true Scaffold1953: 30925-37958 Salix purpurea
SapurV1A.1953s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold1953: 36959-37958 Salix purpurea
SapurV1A.1953s0020 2.0kb upstream 2.0kb upstream 8034 true Scaffold1953: 28925-36958 Salix purpurea
SapurV1A.1953s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold1953: 28925-30924 Salix purpurea
SapurV1A.1953s0020 2.0kb downstream 2.0kb downstream 8034 true Scaffold1953: 30925-38958 Salix purpurea
SapurV1A.1953s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold1953: 36959-38958 Salix purpurea
SapurV1A.1953s0020 5.0kb upstream 5.0kb upstream 11034 true Scaffold1953: 25925-36958 Salix purpurea
SapurV1A.1953s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold1953: 25925-30924 Salix purpurea
SapurV1A.1953s0020 5.0kb downstream 5.0kb downstream 8761 true Scaffold1953: 30925-39685 Salix purpurea
SapurV1A.1953s0020 5.0kb downstream 5.0kb downstream 2727 false Scaffold1953: 36959-39685 Salix purpurea
SapurV1A.1953s0020 10.0kb upstream 10.0kb upstream 16034 true Scaffold1953: 20925-36958 Salix purpurea
SapurV1A.1953s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold1953: 20925-30924 Salix purpurea
SapurV1A.1953s0020 10.0kb downstream 10.0kb downstream 8761 true Scaffold1953: 30925-39685 Salix purpurea
SapurV1A.1953s0020 10.0kb downstream 10.0kb downstream 2727 false Scaffold1953: 36959-39685 Salix purpurea

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122460394 5262 Malpighiales View MSA
124251670 5268 Malvidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain