Gene : Eucgr.A00380 E. grandis v2.0
Defline:  (1 of 2) PTHR24423:SF563 - PHYTOCHROME E Genomic Order:  293
Name:  ? Eucgr.A00380 Secondary Identifier:  ? PAC:32048784
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00380 0.5kb upstream 0.5kb upstream 8064 true Chr01: 6537312-6545375 Eucalyptus grandis
Eucgr.A00380 0.5kb upstream 0.5kb upstream 500 false Chr01: 6544876-6545375 Eucalyptus grandis
Eucgr.A00380 0.5kb downstream 0.5kb downstream 8064 true Chr01: 6536812-6544875 Eucalyptus grandis
Eucgr.A00380 0.5kb downstream 0.5kb downstream 500 false Chr01: 6536812-6537311 Eucalyptus grandis
Eucgr.A00380 1.0kb upstream 1.0kb upstream 8564 true Chr01: 6537312-6545875 Eucalyptus grandis
Eucgr.A00380 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6544876-6545875 Eucalyptus grandis
Eucgr.A00380 1.0kb downstream 1.0kb downstream 8564 true Chr01: 6536312-6544875 Eucalyptus grandis
Eucgr.A00380 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6536312-6537311 Eucalyptus grandis
Eucgr.A00380 2.0kb upstream 2.0kb upstream 9564 true Chr01: 6537312-6546875 Eucalyptus grandis
Eucgr.A00380 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6544876-6546875 Eucalyptus grandis
Eucgr.A00380 2.0kb downstream 2.0kb downstream 9564 true Chr01: 6535312-6544875 Eucalyptus grandis
Eucgr.A00380 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6535312-6537311 Eucalyptus grandis
Eucgr.A00380 5.0kb upstream 5.0kb upstream 12564 true Chr01: 6537312-6549875 Eucalyptus grandis
Eucgr.A00380 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6544876-6549875 Eucalyptus grandis
Eucgr.A00380 5.0kb downstream 5.0kb downstream 12564 true Chr01: 6532312-6544875 Eucalyptus grandis
Eucgr.A00380 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6532312-6537311 Eucalyptus grandis
Eucgr.A00380 10.0kb upstream 10.0kb upstream 17564 true Chr01: 6537312-6554875 Eucalyptus grandis
Eucgr.A00380 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6544876-6554875 Eucalyptus grandis
Eucgr.A00380 10.0kb downstream 10.0kb downstream 17564 true Chr01: 6527312-6544875 Eucalyptus grandis
Eucgr.A00380 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6527312-6537311 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065248 5270 Rosid View MSA
123737518 5271 Pentapetalae View MSA
122797861 5272 Eudicot View MSA
122046644 5273 Angiosperm View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.69695 0.0 21.4576    
cufflinks 5.79216 0.0 12.9699    
cufflinks 6.30277 0.0 14.0764    
cufflinks 6.06694 0.0 13.5513    
cufflinks 9.19578 0.0 20.3592    
cufflinks 17.0625 0.0 37.9245   High

0 Strain