Gene : PHYD A. thaliana TAIR10
Primary Identifier:  ? AT4G16250 Defline:  (1 of 1) K12122 - phytochrome D (PHYD)
Genomic Order:  1536 Name:  ? AT4G16250
Secondary Identifier:  ? PAC:19646074
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G16250 0.5kb upstream 0.5kb upstream 4385 true Chr4: 9195602-9199986 Arabidopsis thaliana
AT4G16250 0.5kb upstream 0.5kb upstream 500 false Chr4: 9199487-9199986 Arabidopsis thaliana
AT4G16250 0.5kb downstream 0.5kb downstream 4385 true Chr4: 9195102-9199486 Arabidopsis thaliana
AT4G16250 0.5kb downstream 0.5kb downstream 500 false Chr4: 9195102-9195601 Arabidopsis thaliana
AT4G16250 1.0kb upstream 1.0kb upstream 4885 true Chr4: 9195602-9200486 Arabidopsis thaliana
AT4G16250 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9199487-9200486 Arabidopsis thaliana
AT4G16250 1.0kb downstream 1.0kb downstream 4885 true Chr4: 9194602-9199486 Arabidopsis thaliana
AT4G16250 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9194602-9195601 Arabidopsis thaliana
AT4G16250 2.0kb upstream 2.0kb upstream 5885 true Chr4: 9195602-9201486 Arabidopsis thaliana
AT4G16250 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9199487-9201486 Arabidopsis thaliana
AT4G16250 2.0kb downstream 2.0kb downstream 5885 true Chr4: 9193602-9199486 Arabidopsis thaliana
AT4G16250 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9193602-9195601 Arabidopsis thaliana
AT4G16250 5.0kb upstream 5.0kb upstream 8885 true Chr4: 9195602-9204486 Arabidopsis thaliana
AT4G16250 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9199487-9204486 Arabidopsis thaliana
AT4G16250 5.0kb downstream 5.0kb downstream 8885 true Chr4: 9190602-9199486 Arabidopsis thaliana
AT4G16250 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9190602-9195601 Arabidopsis thaliana
AT4G16250 10.0kb upstream 10.0kb upstream 13885 true Chr4: 9195602-9209486 Arabidopsis thaliana
AT4G16250 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9199487-9209486 Arabidopsis thaliana
AT4G16250 10.0kb downstream 10.0kb downstream 13885 true Chr4: 9185602-9199486 Arabidopsis thaliana
AT4G16250 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9185602-9195601 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377563 5261 Brassicaceae View MSA
123833552 5264 Brassicales-Malvales View MSA
124343698 5266 SBM View MSA
124238198 5268 Malvidae View MSA
124065248 5270 Rosid View MSA
123737518 5271 Pentapetalae View MSA
122797861 5272 Eudicot View MSA
122046644 5273 Angiosperm View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.667        
cufflinks 4.798        
cufflinks 4.234       Low
cufflinks 5.542        
cufflinks 5.793       High
cufflinks 4.935        

0 Strain