Gene : RDR1 A. thaliana TAIR10
Primary Identifier:  ? AT1G14790 Defline:  (1 of 2) PTHR23079//PTHR23079:SF9 - RNA-DEPENDENT RNA POLYMERASE // RNA-DEPENDENT RNA POLYMERASE 1
Genomic Order:  1484 Name:  ? AT1G14790
Secondary Identifier:  ? PAC:19653476
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0 Pathways

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G14790 0.5kb upstream 0.5kb upstream 4572 true Chr1: 5093961-5098532 Arabidopsis thaliana
AT1G14790 0.5kb upstream 0.5kb upstream 500 false Chr1: 5098033-5098532 Arabidopsis thaliana
AT1G14790 0.5kb downstream 0.5kb downstream 4572 true Chr1: 5093461-5098032 Arabidopsis thaliana
AT1G14790 0.5kb downstream 0.5kb downstream 500 false Chr1: 5093461-5093960 Arabidopsis thaliana
AT1G14790 1.0kb upstream 1.0kb upstream 5072 true Chr1: 5093961-5099032 Arabidopsis thaliana
AT1G14790 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5098033-5099032 Arabidopsis thaliana
AT1G14790 1.0kb downstream 1.0kb downstream 5072 true Chr1: 5092961-5098032 Arabidopsis thaliana
AT1G14790 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5092961-5093960 Arabidopsis thaliana
AT1G14790 2.0kb upstream 2.0kb upstream 6072 true Chr1: 5093961-5100032 Arabidopsis thaliana
AT1G14790 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5098033-5100032 Arabidopsis thaliana
AT1G14790 2.0kb downstream 2.0kb downstream 6072 true Chr1: 5091961-5098032 Arabidopsis thaliana
AT1G14790 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5091961-5093960 Arabidopsis thaliana
AT1G14790 5.0kb upstream 5.0kb upstream 9072 true Chr1: 5093961-5103032 Arabidopsis thaliana
AT1G14790 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5098033-5103032 Arabidopsis thaliana
AT1G14790 5.0kb downstream 5.0kb downstream 9072 true Chr1: 5088961-5098032 Arabidopsis thaliana
AT1G14790 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5088961-5093960 Arabidopsis thaliana
AT1G14790 10.0kb upstream 10.0kb upstream 14072 true Chr1: 5093961-5108032 Arabidopsis thaliana
AT1G14790 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5098033-5108032 Arabidopsis thaliana
AT1G14790 10.0kb downstream 10.0kb downstream 14072 true Chr1: 5083961-5098032 Arabidopsis thaliana
AT1G14790 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5083961-5093960 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380909 5261 Brassicaceae View MSA
123841233 5264 Brassicales-Malvales View MSA
124347665 5266 SBM View MSA
124252285 5268 Malvidae View MSA
124067400 5270 Rosid View MSA
123752294 5271 Pentapetalae View MSA
122797649 5272 Eudicot View MSA
122047757 5273 Angiosperm View MSA
121351040 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.895        
cufflinks 14.199        
cufflinks 6.643       Low
cufflinks 14.114        
cufflinks 7.359       Low
cufflinks 13.264        

0 Strain