Gene : PHYB A. thaliana TAIR10
Primary Identifier:  ? AT2G18790 Defline:  (1 of 1) K12121 - phytochrome B (PHYB)
Genomic Order:  1116 Name:  ? AT2G18790
Secondary Identifier:  ? PAC:19641421
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G18790 0.5kb upstream 0.5kb upstream 5050 true Chr2: 8139381-8144430 Arabidopsis thaliana
AT2G18790 0.5kb upstream 0.5kb upstream 500 false Chr2: 8139381-8139880 Arabidopsis thaliana
AT2G18790 0.5kb downstream 0.5kb downstream 5050 true Chr2: 8139881-8144930 Arabidopsis thaliana
AT2G18790 0.5kb downstream 0.5kb downstream 500 false Chr2: 8144431-8144930 Arabidopsis thaliana
AT2G18790 1.0kb upstream 1.0kb upstream 5550 true Chr2: 8138881-8144430 Arabidopsis thaliana
AT2G18790 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8138881-8139880 Arabidopsis thaliana
AT2G18790 1.0kb downstream 1.0kb downstream 5550 true Chr2: 8139881-8145430 Arabidopsis thaliana
AT2G18790 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8144431-8145430 Arabidopsis thaliana
AT2G18790 2.0kb upstream 2.0kb upstream 6550 true Chr2: 8137881-8144430 Arabidopsis thaliana
AT2G18790 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8137881-8139880 Arabidopsis thaliana
AT2G18790 2.0kb downstream 2.0kb downstream 6550 true Chr2: 8139881-8146430 Arabidopsis thaliana
AT2G18790 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8144431-8146430 Arabidopsis thaliana
AT2G18790 5.0kb upstream 5.0kb upstream 9550 true Chr2: 8134881-8144430 Arabidopsis thaliana
AT2G18790 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8134881-8139880 Arabidopsis thaliana
AT2G18790 5.0kb downstream 5.0kb downstream 9550 true Chr2: 8139881-8149430 Arabidopsis thaliana
AT2G18790 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8144431-8149430 Arabidopsis thaliana
AT2G18790 10.0kb upstream 10.0kb upstream 14550 true Chr2: 8129881-8144430 Arabidopsis thaliana
AT2G18790 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8129881-8139880 Arabidopsis thaliana
AT2G18790 10.0kb downstream 10.0kb downstream 14550 true Chr2: 8139881-8154430 Arabidopsis thaliana
AT2G18790 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8144431-8154430 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377563 5261 Brassicaceae View MSA
123833552 5264 Brassicales-Malvales View MSA
124343698 5266 SBM View MSA
124238198 5268 Malvidae View MSA
124065248 5270 Rosid View MSA
123737518 5271 Pentapetalae View MSA
122797861 5272 Eudicot View MSA
122046644 5273 Angiosperm View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.179        
cufflinks 12.617       Low
cufflinks 17.894       High
cufflinks 15.702        
cufflinks 16.693        
cufflinks 14.094        

0 Strain