Gene : Phvul.001G059800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC Genomic Order:  606
Name:  ? Phvul.001G059800 Secondary Identifier:  ? PAC:37167735
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G059800 0.5kb upstream 0.5kb upstream 5662 true Chr01: 6941408-6947069 Phaseolus vulgaris
Phvul.001G059800 0.5kb upstream 0.5kb upstream 500 false Chr01: 6941408-6941907 Phaseolus vulgaris
Phvul.001G059800 0.5kb downstream 0.5kb downstream 5662 true Chr01: 6941908-6947569 Phaseolus vulgaris
Phvul.001G059800 0.5kb downstream 0.5kb downstream 500 false Chr01: 6947070-6947569 Phaseolus vulgaris
Phvul.001G059800 1.0kb upstream 1.0kb upstream 6162 true Chr01: 6940908-6947069 Phaseolus vulgaris
Phvul.001G059800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6940908-6941907 Phaseolus vulgaris
Phvul.001G059800 1.0kb downstream 1.0kb downstream 6162 true Chr01: 6941908-6948069 Phaseolus vulgaris
Phvul.001G059800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6947070-6948069 Phaseolus vulgaris
Phvul.001G059800 2.0kb upstream 2.0kb upstream 7162 true Chr01: 6939908-6947069 Phaseolus vulgaris
Phvul.001G059800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6939908-6941907 Phaseolus vulgaris
Phvul.001G059800 2.0kb downstream 2.0kb downstream 7162 true Chr01: 6941908-6949069 Phaseolus vulgaris
Phvul.001G059800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6947070-6949069 Phaseolus vulgaris
Phvul.001G059800 5.0kb upstream 5.0kb upstream 10162 true Chr01: 6936908-6947069 Phaseolus vulgaris
Phvul.001G059800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6936908-6941907 Phaseolus vulgaris
Phvul.001G059800 5.0kb downstream 5.0kb downstream 10162 true Chr01: 6941908-6952069 Phaseolus vulgaris
Phvul.001G059800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6947070-6952069 Phaseolus vulgaris
Phvul.001G059800 10.0kb upstream 10.0kb upstream 15162 true Chr01: 6931908-6947069 Phaseolus vulgaris
Phvul.001G059800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6931908-6941907 Phaseolus vulgaris
Phvul.001G059800 10.0kb downstream 10.0kb downstream 15162 true Chr01: 6941908-6957069 Phaseolus vulgaris
Phvul.001G059800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6947070-6957069 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300874 5265 Fabidae View MSA
124066758 5270 Rosid View MSA
123740141 5271 Pentapetalae View MSA
122790910 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.7781 0.0 18.5675    
cufflinks 4.60504 0.0 18.0186    
cufflinks 24.7052 0.0 78.9149   High
cufflinks 1.85362 0.0 6.31039   Low
cufflinks 3.51429 0.0 13.0784    
cufflinks 13.0936 0.0 42.4608   High
cufflinks 2.39919 0.0 9.64871    
cufflinks 3.52234 0.0 14.4198    
cufflinks 1.84105 0.0 8.2113   Low
cufflinks 8.58239 0.0 29.6824    
cufflinks 4.31821 0.0 17.5551    

0 Strain