Gene : Phvul.006G118200 P. vulgaris v2.1
Defline:  (1 of 1) K12121 - phytochrome B (PHYB) Genomic Order:  1174
Name:  ? Phvul.006G118200 Secondary Identifier:  ? PAC:37171801
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G118200 0.5kb upstream 0.5kb upstream 7563 true Chr06: 22632821-22640383 Phaseolus vulgaris
Phvul.006G118200 0.5kb upstream 0.5kb upstream 500 false Chr06: 22632821-22633320 Phaseolus vulgaris
Phvul.006G118200 0.5kb downstream 0.5kb downstream 7563 true Chr06: 22633321-22640883 Phaseolus vulgaris
Phvul.006G118200 0.5kb downstream 0.5kb downstream 500 false Chr06: 22640384-22640883 Phaseolus vulgaris
Phvul.006G118200 1.0kb upstream 1.0kb upstream 8063 true Chr06: 22632321-22640383 Phaseolus vulgaris
Phvul.006G118200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 22632321-22633320 Phaseolus vulgaris
Phvul.006G118200 1.0kb downstream 1.0kb downstream 8063 true Chr06: 22633321-22641383 Phaseolus vulgaris
Phvul.006G118200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 22640384-22641383 Phaseolus vulgaris
Phvul.006G118200 2.0kb upstream 2.0kb upstream 9063 true Chr06: 22631321-22640383 Phaseolus vulgaris
Phvul.006G118200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 22631321-22633320 Phaseolus vulgaris
Phvul.006G118200 2.0kb downstream 2.0kb downstream 9063 true Chr06: 22633321-22642383 Phaseolus vulgaris
Phvul.006G118200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 22640384-22642383 Phaseolus vulgaris
Phvul.006G118200 5.0kb upstream 5.0kb upstream 12063 true Chr06: 22628321-22640383 Phaseolus vulgaris
Phvul.006G118200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 22628321-22633320 Phaseolus vulgaris
Phvul.006G118200 5.0kb downstream 5.0kb downstream 12063 true Chr06: 22633321-22645383 Phaseolus vulgaris
Phvul.006G118200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 22640384-22645383 Phaseolus vulgaris
Phvul.006G118200 10.0kb upstream 10.0kb upstream 17063 true Chr06: 22623321-22640383 Phaseolus vulgaris
Phvul.006G118200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 22623321-22633320 Phaseolus vulgaris
Phvul.006G118200 10.0kb downstream 10.0kb downstream 17063 true Chr06: 22633321-22650383 Phaseolus vulgaris
Phvul.006G118200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 22640384-22650383 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308488 5265 Fabidae View MSA
124065248 5270 Rosid View MSA
123737518 5271 Pentapetalae View MSA
122797861 5272 Eudicot View MSA
122046644 5273 Angiosperm View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.93142 0.0 12.9912   Low
cufflinks 14.3573 0.0 37.4003    
cufflinks 19.2998 0.0 51.0763   High
cufflinks 6.88442 0.0 17.8938    
cufflinks 14.7944 0.0 38.5828    
cufflinks 14.7803 0.0 38.5472    
cufflinks 6.63375 0.0 17.2339    
cufflinks 6.52125 0.0 16.9548    
cufflinks 8.80408 0.0 22.7651    
cufflinks 27.0306 0.0 73.6016   High
cufflinks 13.1629 0.0 34.1922    

0 Strain