Gene : Thecc1EG015349 T. cacao v1.1
Defline:  (1 of 1) PTHR30603//PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1939
Name:  ? Thecc1EG015349 Secondary Identifier:  ? PAC:27447732
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG015349 0.5kb upstream 0.5kb upstream 4939 true scaffold_3: 27479306-27484244 Theobroma cacao
Thecc1EG015349 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 27479306-27479805 Theobroma cacao
Thecc1EG015349 0.5kb downstream 0.5kb downstream 4939 true scaffold_3: 27479806-27484744 Theobroma cacao
Thecc1EG015349 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 27484245-27484744 Theobroma cacao
Thecc1EG015349 1.0kb upstream 1.0kb upstream 5439 true scaffold_3: 27478806-27484244 Theobroma cacao
Thecc1EG015349 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 27478806-27479805 Theobroma cacao
Thecc1EG015349 1.0kb downstream 1.0kb downstream 5439 true scaffold_3: 27479806-27485244 Theobroma cacao
Thecc1EG015349 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 27484245-27485244 Theobroma cacao
Thecc1EG015349 2.0kb upstream 2.0kb upstream 6439 true scaffold_3: 27477806-27484244 Theobroma cacao
Thecc1EG015349 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 27477806-27479805 Theobroma cacao
Thecc1EG015349 2.0kb downstream 2.0kb downstream 6439 true scaffold_3: 27479806-27486244 Theobroma cacao
Thecc1EG015349 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 27484245-27486244 Theobroma cacao
Thecc1EG015349 5.0kb upstream 5.0kb upstream 9439 true scaffold_3: 27474806-27484244 Theobroma cacao
Thecc1EG015349 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 27474806-27479805 Theobroma cacao
Thecc1EG015349 5.0kb downstream 5.0kb downstream 9439 true scaffold_3: 27479806-27489244 Theobroma cacao
Thecc1EG015349 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 27484245-27489244 Theobroma cacao
Thecc1EG015349 10.0kb upstream 10.0kb upstream 14439 true scaffold_3: 27469806-27484244 Theobroma cacao
Thecc1EG015349 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 27469806-27479805 Theobroma cacao
Thecc1EG015349 10.0kb downstream 10.0kb downstream 14439 true scaffold_3: 27479806-27494244 Theobroma cacao
Thecc1EG015349 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 27484245-27494244 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026363 5273 Angiosperm View MSA
123828042 5264 Brassicales-Malvales View MSA
124344212 5266 SBM View MSA
124246245 5268 Malvidae View MSA
124065012 5270 Rosid View MSA
123740689 5271 Pentapetalae View MSA
122788659 5272 Eudicot View MSA
121349199 5274 Embryophyte View MSA
123381214 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain