Protein Family : sigma factor E 124246245

Method ID:  5268 Method Name:  Malvidae
Sequence Alignment:  View MSA Member Count:  23
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23 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
30169.t000309 (1 of 1) PTHR30603//PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL R. communis v0.1 2731   30169: 1733116-1735846
orange1.1g010092m.g (1 of 1) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL C. sinensis v1.1 4184   scaffold00104: 274203-278386
AT5G24120 (1 of 1) PTHR30603//PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL A. thaliana TAIR10 SIGE 2679   Chr5: 8157551-8160229
Thhalv10004166m.g (1 of 1) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL E. salsugineum v1.0 2906   scaffold_6: 3081817-3084722
Ciclev10004760m.g (1 of 1) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL C. clementina v1.0 4159   scaffold_9: 30040457-30044615
Gorai.008G270500 (1 of 1) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL G. raimondii v2.1 3489   Chr08: 54948050-54951538
Thecc1EG015349 (1 of 1) PTHR30603//PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL T. cacao v1.1 4439   scaffold_3: 27479806-27484244
Araha.11104s0003 (1 of 1) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL A. halleri v1.1 2777   Scaffold11104: 9347-12123
Cagra.8922s0001 (1 of 1) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL C. grandiflora v1.1 2666   Scaffold8922: 2-2667
Brara.F02635 (1 of 2) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL B. rapa FPsc v1.3 2538   A06: 21799788-21802325
Brara.I00582 (1 of 2) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL B. rapa FPsc v1.3 3347   A09: 3263992-3267338
Bostr.10199s0021 (1 of 1) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL B. stricta v1.2 2827   Scaffold10199: 172803-175629
SapurV1A.0377s0060 (1 of 2) K03093 - RNA polymerase sigma factor (SIGMA70) S. purpurea v1.0 3802   chr12: 1563322-1567123
SapurV1A.1227s0040 (1 of 3) PTHR30603//PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL S. purpurea v1.0 4084   Scaffold1227: 43882-47965
SapurV1A.4845s0010 (1 of 3) PTHR30603//PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL S. purpurea v1.0 4079   Scaffold4845: 2577-6655
Manes.06G157400 (1 of 2) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL M. esculenta v6.1 2986   Chromosome06: 25928357-25931342
Manes.14G018500 (1 of 2) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL M. esculenta v6.1 4147   Chromosome14: 1730454-1734600
AL6G35480 (1 of 1) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL A. lyrata v2.1 4487   scaffold_6: 10385985-10390471
Potri.012G031100 (1 of 2) K03093 - RNA polymerase sigma factor (SIGMA70) P. trichocarpa v3.1 4156   Chr12: 2771160-2775315
Potri.015G022100 (1 of 2) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL P. trichocarpa v3.1 3991   Chr15: 1695093-1699083
Podel.15G022900 (1 of 2) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL P. deltoides WV94 v2.1 3850   Chr15: 1840693-1844542
Podel.12G033200 (1 of 2) K03093 - RNA polymerase sigma factor (SIGMA70) P. deltoides WV94 v2.1 3971   Chr12: 2682480-2686450
Carub.0006s2185 (1 of 1) PTHR30603//PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL C. rubella v1.1 2278   scaffold_6: 8179801-8182078

23 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
30169.m006532 R. communis v0.1 124246245 sigma factor E 1 5268 Malvidae
orange1.1g010092m C. sinensis v1.1 124246245 sigma factor E 1 5268 Malvidae
AT5G24120.1 A. thaliana TAIR10 124246245 sigma factor E 1 5268 Malvidae
Thecc1EG015349t1 T. cacao v1.1 124246245 sigma factor E 1 5268 Malvidae
SapurV1A.1227s0040.1.p S. purpurea v1.0 124246245 sigma factor E 3 5268 Malvidae
SapurV1A.4845s0010.1.p S. purpurea v1.0 124246245 sigma factor E 3 5268 Malvidae
Potri.012G031100.1.p P. trichocarpa v3.1 124246245 sigma factor E 2 5268 Malvidae
Podel.15G022900.1.p P. deltoides WV94 v2.1 124246245 sigma factor E 2 5268 Malvidae
Thhalv10004166m E. salsugineum v1.0 124246245 sigma factor E 1 5268 Malvidae
Ciclev10004760m C. clementina v1.0 124246245 sigma factor E 1 5268 Malvidae
Gorai.008G270500.1 G. raimondii v2.1 124246245 sigma factor E 1 5268 Malvidae
Araha.11104s0003.1.p A. halleri v1.1 124246245 sigma factor E 1 5268 Malvidae
Cagra.8922s0001.1.p C. grandiflora v1.1 124246245 sigma factor E 1 5268 Malvidae
Brara.F02635.1.p B. rapa FPsc v1.3 124246245 sigma factor E 2 5268 Malvidae
Brara.I00582.1.p B. rapa FPsc v1.3 124246245 sigma factor E 2 5268 Malvidae
Bostr.10199s0021.1.p B. stricta v1.2 124246245 sigma factor E 1 5268 Malvidae
SapurV1A.0377s0060.1.p S. purpurea v1.0 124246245 sigma factor E 3 5268 Malvidae
Manes.14G018500.1.p M. esculenta v6.1 124246245 sigma factor E 2 5268 Malvidae
Manes.06G157400.1.p M. esculenta v6.1 124246245 sigma factor E 2 5268 Malvidae
AL6G35480.t1 A. lyrata v2.1 124246245 sigma factor E 1 5268 Malvidae
Potri.015G022100.1.p P. trichocarpa v3.1 124246245 sigma factor E 2 5268 Malvidae
Podel.12G033200.1.p P. deltoides WV94 v2.1 124246245 sigma factor E 2 5268 Malvidae
Carub.0006s2185.1.p C. rubella v1.1 124246245 sigma factor E 1 5268 Malvidae