Protein Family : cold shock domain protein 1 124250533

Method ID:  5268 Method Name:  Malvidae
Sequence Alignment:  View MSA Member Count:  65

65 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29908.t000199 (1 of 1) PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) R. communis v0.1 555   29908: 211765-212319
29405.t000010 (1 of 1) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED R. communis v0.1 1205   29405: 50629-51833
orange1.1g030905m.g (1 of 1) PTHR11544//PTHR11544:SF57 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. sinensis v1.1 951   scaffold00004: 830492-831442
orange1.1g047168m.g (1 of 1) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing C. sinensis v1.1 777   scaffold00017: 882337-883113
AT4G36020 (1 of 3) K09250 - cellular nucleic acid-binding protein (CNBP) A. thaliana TAIR10 CSDP1 1285   Chr4: 17043112-17044396
AT4G38680 (1 of 3) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS A. thaliana TAIR10 GRP2 1299   Chr4: 18071884-18073182
AT2G21060 (1 of 3) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS A. thaliana TAIR10 GRP2B 858   Chr2: 9036793-9037650
AT2G17870 (1 of 3) K09250 - cellular nucleic acid-binding protein (CNBP) A. thaliana TAIR10 CSP3 1256   Chr2: 7763975-7765230
Thhalv10026001m.g (1 of 1) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing E. salsugineum v1.0 1325   scaffold_1: 1716728-1718052
Thhalv10022795m.g (1 of 2) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS E. salsugineum v1.0 1340   scaffold_11: 1186185-1187524
Ciclev10002696m.g (1 of 1) PTHR11544//PTHR11544:SF57 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. clementina v1.0 779   scaffold_5: 37113171-37113949
Ciclev10027474m.g (1 of 1) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. clementina v1.0 795   scaffold_7: 921138-921932
Lus10028073.g (1 of 7) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS L. usitatissimum v1.0 579   scaffold132: 642864-643442
Lus10005066.g (1 of 3) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing L. usitatissimum v1.0 480   scaffold1982: 172689-173168
Lus10041902.g (1 of 2) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS L. usitatissimum v1.0 741   scaffold272: 2267368-2268108
Lus10034487.g (1 of 7) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS L. usitatissimum v1.0 550   scaffold310: 1526796-1527345
Lus10028449.g (1 of 2) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS L. usitatissimum v1.0 744   scaffold413: 680100-680843
Gorai.002G195100 (1 of 8) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS G. raimondii v2.1 3755   Chr02: 52798613-52802367
Gorai.002G195000 (1 of 8) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS G. raimondii v2.1 1409   Chr02: 52786495-52787903
Gorai.008G062500 (1 of 1) PF00098//PF00313//PF14392 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) // Zinc knuckle (zf-CCHC_4) G. raimondii v2.1 2139   Chr08: 10033178-10035316
Gorai.009G243500 (1 of 3) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing G. raimondii v2.1 1058   Chr09: 19496296-19497353
Thecc1EG000198 (1 of 1) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED T. cacao v1.1 4137   scaffold_1: 755810-759946
Thecc1EG035057 (1 of 1) PTHR11544//PTHR11544:SF57 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED T. cacao v1.1 1735   scaffold_8: 6244224-6245958
Araha.6604s0011 (1 of 3) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS A. halleri v1.1 1131   Scaffold6604: 39330-40460
Cagra.2236s0009 (1 of 3) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. grandiflora v1.1 789   Scaffold2236: 40742-41530
Cagra.2961s0009 (1 of 3) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. grandiflora v1.1 594   Scaffold2961: 25290-25883
Cagra.3126s0019 (1 of 1) PF00098//PF00313//PF14392 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) // Zinc knuckle (zf-CCHC_4) C. grandiflora v1.1 933   Scaffold3126: 76376-77308
Brara.D01243 (1 of 6) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS B. rapa FPsc v1.3 618   A04: 11340017-11340634
Brara.H02056 (1 of 6) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS B. rapa FPsc v1.3 844   A08: 18564343-18565186
Brara.I04669 (1 of 3) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing B. rapa FPsc v1.3 600   A09: 40031375-40031974

65 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29908.m006148 R. communis v0.1 124250533 cold shock domain protein 1 2 5268 Malvidae
Thhalv10026001m E. salsugineum v1.0 124250533 cold shock domain protein 1 2 5268 Malvidae
Ciclev10027474m C. clementina v1.0 124250533 cold shock domain protein 1 2 5268 Malvidae
Lus10034487 L. usitatissimum v1.0 124250533 cold shock domain protein 1 5 5268 Malvidae
Gorai.008G062500.1 G. raimondii v2.1 124250533 cold shock domain protein 1 4 5268 Malvidae
Cagra.3126s0019.1.p C. grandiflora v1.1 124250533 cold shock domain protein 1 3 5268 Malvidae
Brara.I04669.1.p B. rapa FPsc v1.3 124250533 cold shock domain protein 1 4 5268 Malvidae
Bostr.25542s0051.1.p B. stricta v1.2 124250533 cold shock domain protein 1 3 5268 Malvidae
SapurV1A.0515s0060.1.p S. purpurea v1.0 124250533 cold shock domain protein 1 5 5268 Malvidae
Manes.02G105200.1.p M. esculenta v6.1 124250533 cold shock domain protein 1 5 5268 Malvidae
Manes.18G074700.1.p M. esculenta v6.1 124250533 cold shock domain protein 1 5 5268 Malvidae
Manes.01G146700.1.p M. esculenta v6.1 124250533 cold shock domain protein 1 5 5268 Malvidae
AL3G50910.t1 A. lyrata v2.1 124250533 cold shock domain protein 1 4 5268 Malvidae
Potri.009G132000.1.p P. trichocarpa v3.1 124250533 cold shock domain protein 1 6 5268 Malvidae
Potri.004G172600.1.p P. trichocarpa v3.1 124250533 cold shock domain protein 1 6 5268 Malvidae
Potri.005G112800.1.p P. trichocarpa v3.1 124250533 cold shock domain protein 1 6 5268 Malvidae
Potri.005G174300.1.p P. trichocarpa v3.1 124250533 cold shock domain protein 1 6 5268 Malvidae
Podel.09G137400.1.p P. deltoides WV94 v2.1 124250533 cold shock domain protein 1 7 5268 Malvidae
Podel.04G175100.1.p P. deltoides WV94 v2.1 124250533 cold shock domain protein 1 7 5268 Malvidae
Podel.05G185600.1.p P. deltoides WV94 v2.1 124250533 cold shock domain protein 1 7 5268 Malvidae
Carub.0007s0421.1.p C. rubella v1.1 124250533 cold shock domain protein 1 4 5268 Malvidae
Carub.0007s0055.1.p C. rubella v1.1 124250533 cold shock domain protein 1 4 5268 Malvidae
29405.m000161 R. communis v0.1 124250533 cold shock domain protein 1 2 5268 Malvidae
orange1.1g047168m C. sinensis v1.1 124250533 cold shock domain protein 1 2 5268 Malvidae
orange1.1g030905m C. sinensis v1.1 124250533 cold shock domain protein 1 2 5268 Malvidae
AT2G21060.1 A. thaliana TAIR10 124250533 cold shock domain protein 1 4 5268 Malvidae
AT2G17870.1 A. thaliana TAIR10 124250533 cold shock domain protein 1 4 5268 Malvidae
AT4G38680.1 A. thaliana TAIR10 124250533 cold shock domain protein 1 4 5268 Malvidae
AT4G36020.1 A. thaliana TAIR10 124250533 cold shock domain protein 1 4 5268 Malvidae
Thhalv10022795m E. salsugineum v1.0 124250533 cold shock domain protein 1 2 5268 Malvidae