Protein Family : cold, circadian rhythm, and rna binding 2 124250181

Method ID:  5268 Method Name:  Malvidae
Sequence Alignment:  View MSA Member Count:  30

30 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29633.t000001 (1 of 173) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) R. communis v0.1 1038   29633: 2201-3238
AT4G39260 (1 of 234) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) A. thaliana TAIR10 CCR1 1181   Chr4: 18273899-18275079
AT2G21660 (1 of 234) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) A. thaliana TAIR10 GRP7 1145   Chr2: 9265249-9266393
Thhalv10000386m.g (1 of 3) PTHR24012:SF308 - PROTEIN Y55F3AM.3, ISOFORM A E. salsugineum v1.0 1250   scaffold_15: 355014-356263
Lus10023569.g (1 of 373) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) L. usitatissimum v1.0 821   scaffold1216: 845548-846368
Lus10042321.g (1 of 373) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) L. usitatissimum v1.0 892   scaffold123: 1678766-1679657
Lus10026343.g (1 of 373) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) L. usitatissimum v1.0 831   scaffold898: 712895-713725
Gorai.013G036800 (1 of 310) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) G. raimondii v2.1 1221   Chr13: 2909216-2910436
Thecc1EG006886 (1 of 215) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) T. cacao v1.1 1086   scaffold_2: 4284115-4285200
Cagra.0157s0007 (1 of 222) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) C. grandiflora v1.1 1098   Scaffold157: 21088-22185
Cagra.2374s0022 (1 of 222) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) C. grandiflora v1.1 1033   Scaffold2374: 60552-61584
Brara.D01278 (1 of 340) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) B. rapa FPsc v1.3 1056   A04: 11614131-11615186
Brara.H01810 (1 of 340) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) B. rapa FPsc v1.3 979   A08: 17296692-17297670
Brara.I04624 (1 of 340) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) B. rapa FPsc v1.3 1004   A09: 39832232-39833235
Bostr.5022s0064 (1 of 225) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) B. stricta v1.2 1049   Scaffold5022: 491075-492123
Bostr.25542s0115 (1 of 225) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) B. stricta v1.2 1075   Scaffold25542: 470754-471828
SapurV1A.1590s0030 (1 of 323) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) S. purpurea v1.0 1342   chr13: 8436586-8437927
SapurV1A.1415s0010 (1 of 323) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) S. purpurea v1.0 351   Scaffold1415: 13131-13481
SapurV1A.7273s0010 (1 of 323) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) S. purpurea v1.0 847   Scaffold7273: 290-1136
SapurV1A.0037s0460 (1 of 323) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) S. purpurea v1.0 1948   chr09: 9826026-9827973
SapurV1A.1439s0010 (1 of 4) K13195 - cold-inducible RNA-binding protein (CIRBP) S. purpurea v1.0 1398   chr04: 7311003-7312400
Manes.15G163200 (1 of 258) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) M. esculenta v6.1 998   Chromosome15: 12889945-12890942
Manes.17G101400 (1 of 258) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) M. esculenta v6.1 1326   Chromosome17: 24270204-24271529
AL4G10860 (1 of 260) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) A. lyrata v2.1 1155   scaffold_4: 436070-437224
AL7G11250 (1 of 260) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) A. lyrata v2.1 1102   scaffold_7: 473634-474735
Potri.004G155300 (1 of 4) K13195 - cold-inducible RNA-binding protein (CIRBP) P. trichocarpa v3.1 1172   Chr04: 17655696-17656867
Potri.009G116400 (1 of 305) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) P. trichocarpa v3.1 1051   Chr09: 9834833-9835883
Podel.04G159200 (1 of 4) K13195 - cold-inducible RNA-binding protein (CIRBP) P. deltoides WV94 v2.1 1061   Chr04: 17377861-17378921
Carub.0004s0071 (1 of 247) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) C. rubella v1.1 1096   scaffold_4: 261303-262398
Carub.0007s0118 (1 of 247) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) C. rubella v1.1 1013   scaffold_7: 419506-420518

30 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29633.m000882 R. communis v0.1 124250181 cold, circadian rhythm, and rna binding 2 1 5268 Malvidae
Cagra.2374s0022.1.p C. grandiflora v1.1 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
SapurV1A.1439s0010.1.p S. purpurea v1.0 124250181 cold, circadian rhythm, and rna binding 2 5 5268 Malvidae
AL7G11250.t1 A. lyrata v2.1 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
Potri.009G116400.1.p P. trichocarpa v3.1 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
Podel.04G159200.1.p P. deltoides WV94 v2.1 124250181 cold, circadian rhythm, and rna binding 2 1 5268 Malvidae
Carub.0007s0118.1.p C. rubella v1.1 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
Carub.0004s0071.1.p C. rubella v1.1 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
AT4G39260.1 A. thaliana TAIR10 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
AT2G21660.1 A. thaliana TAIR10 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
Thhalv10000386m E. salsugineum v1.0 124250181 cold, circadian rhythm, and rna binding 2 1 5268 Malvidae
Lus10042321 L. usitatissimum v1.0 124250181 cold, circadian rhythm, and rna binding 2 3 5268 Malvidae
Lus10023569 L. usitatissimum v1.0 124250181 cold, circadian rhythm, and rna binding 2 3 5268 Malvidae
Lus10026343 L. usitatissimum v1.0 124250181 cold, circadian rhythm, and rna binding 2 3 5268 Malvidae
Gorai.013G036800.1 G. raimondii v2.1 124250181 cold, circadian rhythm, and rna binding 2 1 5268 Malvidae
Thecc1EG006886t1 T. cacao v1.1 124250181 cold, circadian rhythm, and rna binding 2 1 5268 Malvidae
Cagra.0157s0007.1.p C. grandiflora v1.1 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
Brara.I04624.1.p B. rapa FPsc v1.3 124250181 cold, circadian rhythm, and rna binding 2 3 5268 Malvidae
Brara.D01278.1.p B. rapa FPsc v1.3 124250181 cold, circadian rhythm, and rna binding 2 3 5268 Malvidae
Brara.H01810.1.p B. rapa FPsc v1.3 124250181 cold, circadian rhythm, and rna binding 2 3 5268 Malvidae
Bostr.25542s0115.1.p B. stricta v1.2 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
Bostr.5022s0064.1.p B. stricta v1.2 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
SapurV1A.0037s0460.1.p S. purpurea v1.0 124250181 cold, circadian rhythm, and rna binding 2 5 5268 Malvidae
SapurV1A.1590s0030.1.p S. purpurea v1.0 124250181 cold, circadian rhythm, and rna binding 2 5 5268 Malvidae
SapurV1A.1415s0010.1.p S. purpurea v1.0 124250181 cold, circadian rhythm, and rna binding 2 5 5268 Malvidae
SapurV1A.7273s0010.1.p S. purpurea v1.0 124250181 cold, circadian rhythm, and rna binding 2 5 5268 Malvidae
Manes.17G101400.1.p M. esculenta v6.1 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
Manes.15G163200.1.p M. esculenta v6.1 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
AL4G10860.t1 A. lyrata v2.1 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae
Potri.004G155300.1.p P. trichocarpa v3.1 124250181 cold, circadian rhythm, and rna binding 2 2 5268 Malvidae