Protein Family : cold shock domain protein 1 124338789

Method ID:  5266 Method Name:  SBM
Sequence Alignment:  View MSA Member Count:  17

17 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
orange1.1g047168m.g (1 of 1) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing C. sinensis v1.1 777   scaffold00017: 882337-883113
AT4G36020 (1 of 3) K09250 - cellular nucleic acid-binding protein (CNBP) A. thaliana TAIR10 CSDP1 1285   Chr4: 17043112-17044396
AT2G17870 (1 of 3) K09250 - cellular nucleic acid-binding protein (CNBP) A. thaliana TAIR10 CSP3 1256   Chr2: 7763975-7765230
Thhalv10026001m.g (1 of 1) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing E. salsugineum v1.0 1325   scaffold_1: 1716728-1718052
Thhalv10022795m.g (1 of 2) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS E. salsugineum v1.0 1340   scaffold_11: 1186185-1187524
Ciclev10027474m.g (1 of 1) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. clementina v1.0 795   scaffold_7: 921138-921932
Gorai.008G062500 (1 of 1) PF00098//PF00313//PF14392 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) // Zinc knuckle (zf-CCHC_4) G. raimondii v2.1 2139   Chr08: 10033178-10035316
Thecc1EG000198 (1 of 1) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED T. cacao v1.1 4137   scaffold_1: 755810-759946
Cagra.2236s0009 (1 of 3) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. grandiflora v1.1 789   Scaffold2236: 40742-41530
Cagra.3126s0019 (1 of 1) PF00098//PF00313//PF14392 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) // Zinc knuckle (zf-CCHC_4) C. grandiflora v1.1 933   Scaffold3126: 76376-77308
Brara.K01332 (1 of 3) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing B. rapa FPsc v1.3 771   Scaffold58736: 583551-584321
Bostr.7867s1467 (1 of 1) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing B. stricta v1.2 1196   Scaffold7867: 7357306-7358501
Bostr.18351s0255 (1 of 3) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS B. stricta v1.2 930   Scaffold18351: 2093401-2094330
AL3G50910 (1 of 5) K09250 - cellular nucleic acid-binding protein (CNBP) A. lyrata v2.1 1376   scaffold_3: 22301560-22302935
AL7G15030 (1 of 5) K09250 - cellular nucleic acid-binding protein (CNBP) A. lyrata v2.1 1168   scaffold_7: 2061552-2062719
Carub.0007s0421 (1 of 3) K09250 - cellular nucleic acid-binding protein (CNBP) C. rubella v1.1 789   scaffold_7: 1597748-1598536
Carub.0003s3202 (1 of 3) K09250 - cellular nucleic acid-binding protein (CNBP) C. rubella v1.1 1368   scaffold_3: 13552124-13553491

17 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Ciclev10027474m C. clementina v1.0 124338789 cold shock domain protein 1 1 5266 SBM
Gorai.008G062500.1 G. raimondii v2.1 124338789 cold shock domain protein 1 1 5266 SBM
Cagra.3126s0019.1.p C. grandiflora v1.1 124338789 cold shock domain protein 1 2 5266 SBM
AL3G50910.t1 A. lyrata v2.1 124338789 cold shock domain protein 1 2 5266 SBM
Carub.0007s0421.1.p C. rubella v1.1 124338789 cold shock domain protein 1 2 5266 SBM
orange1.1g047168m C. sinensis v1.1 124338789 cold shock domain protein 1 1 5266 SBM
AT2G17870.1 A. thaliana TAIR10 124338789 cold shock domain protein 1 2 5266 SBM
AT4G36020.1 A. thaliana TAIR10 124338789 cold shock domain protein 1 2 5266 SBM
Thhalv10026001m E. salsugineum v1.0 124338789 cold shock domain protein 1 2 5266 SBM
Thhalv10022795m E. salsugineum v1.0 124338789 cold shock domain protein 1 2 5266 SBM
Thecc1EG000198t1 T. cacao v1.1 124338789 cold shock domain protein 1 1 5266 SBM
Cagra.2236s0009.1.p C. grandiflora v1.1 124338789 cold shock domain protein 1 2 5266 SBM
Brara.K01332.1.p B. rapa FPsc v1.3 124338789 cold shock domain protein 1 1 5266 SBM
Bostr.7867s1467.1.p B. stricta v1.2 124338789 cold shock domain protein 1 2 5266 SBM
Bostr.18351s0255.1.p B. stricta v1.2 124338789 cold shock domain protein 1 2 5266 SBM
AL7G15030.t1 A. lyrata v2.1 124338789 cold shock domain protein 1 2 5266 SBM
Carub.0003s3202.1.p C. rubella v1.1 124338789 cold shock domain protein 1 2 5266 SBM