Gene : Cagra.3501s0013 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23079:SF9 - RNA-DEPENDENT RNA POLYMERASE 1 Genomic Order:  13
Name:  ? Cagra.3501s0013 Secondary Identifier:  ? PAC:28902316
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3501s0013 0.5kb upstream 0.5kb upstream 4358 true Scaffold3501: 49659-54016 Capsella grandiflora
Cagra.3501s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold3501: 49659-50158 Capsella grandiflora
Cagra.3501s0013 0.5kb downstream 0.5kb downstream 4358 true Scaffold3501: 50159-54516 Capsella grandiflora
Cagra.3501s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold3501: 54017-54516 Capsella grandiflora
Cagra.3501s0013 1.0kb upstream 1.0kb upstream 4858 true Scaffold3501: 49159-54016 Capsella grandiflora
Cagra.3501s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold3501: 49159-50158 Capsella grandiflora
Cagra.3501s0013 1.0kb downstream 1.0kb downstream 4858 true Scaffold3501: 50159-55016 Capsella grandiflora
Cagra.3501s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold3501: 54017-55016 Capsella grandiflora
Cagra.3501s0013 2.0kb upstream 2.0kb upstream 5858 true Scaffold3501: 48159-54016 Capsella grandiflora
Cagra.3501s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold3501: 48159-50158 Capsella grandiflora
Cagra.3501s0013 2.0kb downstream 2.0kb downstream 5858 true Scaffold3501: 50159-56016 Capsella grandiflora
Cagra.3501s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold3501: 54017-56016 Capsella grandiflora
Cagra.3501s0013 5.0kb upstream 5.0kb upstream 8858 true Scaffold3501: 45159-54016 Capsella grandiflora
Cagra.3501s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold3501: 45159-50158 Capsella grandiflora
Cagra.3501s0013 5.0kb downstream 5.0kb downstream 8858 true Scaffold3501: 50159-59016 Capsella grandiflora
Cagra.3501s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold3501: 54017-59016 Capsella grandiflora
Cagra.3501s0013 10.0kb upstream 10.0kb upstream 13858 true Scaffold3501: 40159-54016 Capsella grandiflora
Cagra.3501s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold3501: 40159-50158 Capsella grandiflora
Cagra.3501s0013 10.0kb downstream 10.0kb downstream 13858 true Scaffold3501: 50159-64016 Capsella grandiflora
Cagra.3501s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold3501: 54017-64016 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380909 5261 Brassicaceae View MSA
123841233 5264 Brassicales-Malvales View MSA
124347665 5266 SBM View MSA
124252285 5268 Malvidae View MSA
124067400 5270 Rosid View MSA
123752294 5271 Pentapetalae View MSA
122797649 5272 Eudicot View MSA
122047757 5273 Angiosperm View MSA
121351040 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain