Gene : Glyma.17G192200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC Genomic Order:  1922
Name:  ? Glyma.17G192200 Secondary Identifier:  ? PAC:30480628
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G192200 0.5kb upstream 0.5kb upstream 8496   true Chr17: 27557800-27566295 Glycine max
Glyma.17G192200 0.5kb upstream 0.5kb upstream 500   false Chr17: 27565796-27566295 Glycine max
Glyma.17G192200 0.5kb downstream 0.5kb downstream 8496   true Chr17: 27557300-27565795 Glycine max
Glyma.17G192200 0.5kb downstream 0.5kb downstream 500   false Chr17: 27557300-27557799 Glycine max
Glyma.17G192200 1.0kb upstream 1.0kb upstream 8996   true Chr17: 27557800-27566795 Glycine max
Glyma.17G192200 1.0kb upstream 1.0kb upstream 1000   false Chr17: 27565796-27566795 Glycine max
Glyma.17G192200 1.0kb downstream 1.0kb downstream 8996   true Chr17: 27556800-27565795 Glycine max
Glyma.17G192200 1.0kb downstream 1.0kb downstream 1000   false Chr17: 27556800-27557799 Glycine max
Glyma.17G192200 2.0kb upstream 2.0kb upstream 9996   true Chr17: 27557800-27567795 Glycine max
Glyma.17G192200 2.0kb upstream 2.0kb upstream 2000   false Chr17: 27565796-27567795 Glycine max
Glyma.17G192200 2.0kb downstream 2.0kb downstream 9996   true Chr17: 27555800-27565795 Glycine max
Glyma.17G192200 2.0kb downstream 2.0kb downstream 2000   false Chr17: 27555800-27557799 Glycine max
Glyma.17G192200 5.0kb upstream 5.0kb upstream 12996   true Chr17: 27557800-27570795 Glycine max
Glyma.17G192200 5.0kb upstream 5.0kb upstream 5000   false Chr17: 27565796-27570795 Glycine max
Glyma.17G192200 5.0kb downstream 5.0kb downstream 12996   true Chr17: 27552800-27565795 Glycine max
Glyma.17G192200 5.0kb downstream 5.0kb downstream 5000   false Chr17: 27552800-27557799 Glycine max
Glyma.17G192200 10.0kb upstream 10.0kb upstream 17996   true Chr17: 27557800-27575795 Glycine max
Glyma.17G192200 10.0kb upstream 10.0kb upstream 10000   false Chr17: 27565796-27575795 Glycine max
Glyma.17G192200 10.0kb downstream 10.0kb downstream 17996   true Chr17: 27547800-27565795 Glycine max
Glyma.17G192200 10.0kb downstream 10.0kb downstream 10000   false Chr17: 27547800-27557799 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300874 5265 Fabidae View MSA
124066758 5270 Rosid View MSA
123740141 5271 Pentapetalae View MSA
122790910 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.8286 0.0 97.2868   High
cufflinks 7.64532 0.0 32.5804    
cufflinks 10.2837 0.0 44.6959    
cufflinks 5.51744 0.0 25.2613    
cufflinks 3.15648 0.0 17.105   Low
cufflinks 5.83789 0.0 25.4964    
cufflinks 4.31855 0.0 20.6829    
cufflinks 6.04679 0.0 28.5066    
cufflinks 2.69877 0.0 15.28   Low
cufflinks 0.577        
cufflinks 0.133       Low
cufflinks 0.605        
cufflinks 0.48        
cufflinks 0.283        
cufflinks 0.2        
cufflinks 1.141       High
cufflinks 0.251        
cufflinks 0.558        
cufflinks 0.524        
cufflinks 1.581       High
cufflinks 0.146       Low
cufflinks 1.487       High
cufflinks 0.958        
cufflinks 0.129       Low
cufflinks 1.385       High
cufflinks 0.233        

0 Strain