Gene : Bostr.25570s0003 B. stricta v1.2
Defline:  (1 of 8) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  3
Name:  ? Bostr.25570s0003 Secondary Identifier:  ? PAC:30659402
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25570s0003 0.5kb upstream 0.5kb upstream 1504 true Scaffold25570: 10144-11647 Boechera stricta
Bostr.25570s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold25570: 11148-11647 Boechera stricta
Bostr.25570s0003 0.5kb downstream 0.5kb downstream 1504 true Scaffold25570: 9644-11147 Boechera stricta
Bostr.25570s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold25570: 9644-10143 Boechera stricta
Bostr.25570s0003 1.0kb upstream 1.0kb upstream 2004 true Scaffold25570: 10144-12147 Boechera stricta
Bostr.25570s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold25570: 11148-12147 Boechera stricta
Bostr.25570s0003 1.0kb downstream 1.0kb downstream 2004 true Scaffold25570: 9144-11147 Boechera stricta
Bostr.25570s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold25570: 9144-10143 Boechera stricta
Bostr.25570s0003 2.0kb upstream 2.0kb upstream 3004 true Scaffold25570: 10144-13147 Boechera stricta
Bostr.25570s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold25570: 11148-13147 Boechera stricta
Bostr.25570s0003 2.0kb downstream 2.0kb downstream 3004 true Scaffold25570: 8144-11147 Boechera stricta
Bostr.25570s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold25570: 8144-10143 Boechera stricta
Bostr.25570s0003 5.0kb upstream 5.0kb upstream 6004 true Scaffold25570: 10144-16147 Boechera stricta
Bostr.25570s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold25570: 11148-16147 Boechera stricta
Bostr.25570s0003 5.0kb downstream 5.0kb downstream 6004 true Scaffold25570: 5144-11147 Boechera stricta
Bostr.25570s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold25570: 5144-10143 Boechera stricta
Bostr.25570s0003 10.0kb upstream 10.0kb upstream 11004 true Scaffold25570: 10144-21147 Boechera stricta
Bostr.25570s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold25570: 11148-21147 Boechera stricta
Bostr.25570s0003 10.0kb downstream 10.0kb downstream 11004 true Scaffold25570: 144-11147 Boechera stricta
Bostr.25570s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold25570: 144-10143 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380801 5261 Brassicaceae View MSA
123841248 5264 Brassicales-Malvales View MSA
124350615 5266 SBM View MSA
124253184 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain